J3_8XU8_038
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XU8_038 not in the Motif Atlas
- Homologous match to J3_8P9A_065
- Geometric discrepancy: 0.2942
- The information below is about J3_8P9A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_81015.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8XU8|1|A|C|3298
8XU8|1|A|A|3299
8XU8|1|A|U|3300
*
8XU8|1|A|A|3314
8XU8|1|A|G|3315
8XU8|1|A|A|3316
8XU8|1|A|U|3317
8XU8|1|A|G|3318
*
8XU8|1|A|C|3388
8XU8|1|A|U|3389
8XU8|1|A|G|3390
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain R
- Large ribosomal subunit protein uL22A
- Chain f
- Large ribosomal subunit protein eL31A
Coloring options: