J3_8XXL_003

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8XXL|1|S2|C|1138, 8XXL|1|S2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXL|1|S2|C|1094
8XXL|1|S2|C|1095
8XXL|1|S2|G|1096
*
8XXL|1|S2|U|1136
8XXL|1|S2|U|1137
8XXL|1|S2|C|1138
8XXL|1|S2|C|1139
8XXL|1|S2|G|1140
*
8XXL|1|S2|C|1147
8XXL|1|S2|A|1148
8XXL|1|S2|A|1149
8XXL|1|S2|A|1150
8XXL|1|S2|G|1151

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SV

40S ribosomal protein S21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27