J3_8XZ3_004

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XZ3_004 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.176

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8XZ3|1|A|G|1173
8XZ3|1|A|G|1174
8XZ3|1|A|A|1175
*
8XZ3|1|A|U|1199
8XZ3|1|A|U|1200
8XZ3|1|A|G|1201
8XZ3|1|A|A|1202
8XZ3|1|A|A|1203
8XZ3|1|A|A|1204
8XZ3|1|A|G|1205
*
8XZ3|1|A|C|1220
8XZ3|1|A|A|1221
8XZ3|1|A|C|1222

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL10

Chain J

Large ribosomal subunit protein uL11

Chain f

50S ribosomal protein L36