J3_8XZ3_007
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XZ3_007 not in the Motif Atlas
- Homologous match to J3_8VTW_006
- Geometric discrepancy: 0.1053
- The information below is about J3_8VTW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.4
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
8XZ3|1|A|U|2314
8XZ3|1|A|U|2315
8XZ3|1|A|G|2316
*
8XZ3|1|A|C|2419
8XZ3|1|A|U|2420
8XZ3|1|A|A|2421
8XZ3|1|A|A|2422
8XZ3|1|A|C|2423
*
8XZ3|1|A|G|2447
8XZ3|1|A|G|2448
8XZ3|1|A|A|2449
8XZ3|1|A|C|2450
8XZ3|1|A|A|2451
8XZ3|1|A|G|2452
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain H
- 50S ribosomal protein L9
- Chain Y
- Large ribosomal subunit protein bL28
Coloring options: