J3_8Y0U_004

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0U_004 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.276

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|G|1230
8Y0U|1|C1|A|1231
8Y0U|1|C1|C|1232
*
8Y0U|1|C1|G|1256
8Y0U|1|C1|C|1257
8Y0U|1|C1|U|1258
8Y0U|1|C1|A|1259
8Y0U|1|C1|A|1260
8Y0U|1|C1|G|1261
8Y0U|1|C1|G|1262
*
8Y0U|1|C1|C|1277
8Y0U|1|C1|A|1278
8Y0U|1|C1|C|1279

Current chains

Chain C1

25S rRNA

Nearby chains

Chain P0

Large ribosomal subunit protein uL10

Chain P2

Large ribosomal subunit protein uL11A