J3_8Y0U_005

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8Y0U|1|C1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0U_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1139

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8Y0U|1|C1|U|1479
8Y0U|1|C1|G|1480
8Y0U|1|C1|A|1481
8Y0U|1|C1|A|1482
8Y0U|1|C1|G|1483
8Y0U|1|C1|U|1484
8Y0U|1|C1|G|1485
*
8Y0U|1|C1|C|1857
8Y0U|1|C1|A|1858
8Y0U|1|C1|A|1859
*
8Y0U|1|C1|U|1871
8Y0U|1|C1|C|1872
8Y0U|1|C1|U|1873
8Y0U|1|C1|A|1874

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain Lg

Large ribosomal subunit protein eL34A