3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
AUUG*CUUAUU*AAGACAUU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Y0U_007 not in the Motif Atlas
Homologous match to J3_5TBW_012
Geometric discrepancy: 0.1174
The information below is about J3_5TBW_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_18654.1
Basepair signature
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
Number of instances in this motif group
2

Unit IDs

8Y0U|1|C1|A|2432
8Y0U|1|C1|U|2433
8Y0U|1|C1|U|2434
8Y0U|1|C1|G|2435
*
8Y0U|1|C1|C|2512
8Y0U|1|C1|U|2513
8Y0U|1|C1|U|2514
8Y0U|1|C1|A|2515
8Y0U|1|C1|U|2516
8Y0U|1|C1|U|2517
*
8Y0U|1|C1|A|2590
8Y0U|1|C1|A|2591
8Y0U|1|C1|G|2592
8Y0U|1|C1|A|2593
8Y0U|1|C1|C|2594
8Y0U|1|C1|A|2595
8Y0U|1|C1|U|2596
8Y0U|1|C1|U|2597

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LA
Large ribosomal subunit protein uL2A
Chain LG
Large ribosomal subunit protein eL8A
Chain LN
Large ribosomal subunit protein eL15A
Chain Li
Large ribosomal subunit protein eL36A

Coloring options:


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