J3_8Y0U_015

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0U_015 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.2026

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C2|C|1161
8Y0U|1|C2|C|1162
8Y0U|1|C2|A|1163
8Y0U|1|C2|G|1164
*
8Y0U|1|C2|C|1581
8Y0U|1|C2|U|1582
8Y0U|1|C2|A|1583
8Y0U|1|C2|G|1584
8Y0U|1|C2|U|1585
8Y0U|1|C2|A|1586
8Y0U|1|C2|A|1587
*
8Y0U|1|C2|U|1609
8Y0U|1|C2|G|1610
8Y0U|1|C2|A|1611
8Y0U|1|C2|U|1612
8Y0U|1|C2|U|1613
8Y0U|1|C2|A|1614
8Y0U|1|C2|C|1615
8Y0U|1|C2|G|1616

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9A

Chain Sc

Small ribosomal subunit protein eS28A