J3_8Y0U_036

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGA*UAAUA*UA

Length

10 nucleotides

Bulged bases

8Y0U|1|C2|U|864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0U_036 not in the Motif Atlas

Geometric match to J3_4V88_080

Geometric discrepancy: 0.182

The information below is about J3_4V88_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.3

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8Y0U|1|C2|U|633
8Y0U|1|C2|G|634
8Y0U|1|C2|A|635
*
8Y0U|1|C2|U|861
8Y0U|1|C2|A|862
8Y0U|1|C2|A|863
8Y0U|1|C2|U|864
8Y0U|1|C2|A|865
*
8Y0U|1|C2|U|965
8Y0U|1|C2|A|966

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SH

40S ribosomal protein S7-A

Chain SL

Small ribosomal subunit protein uS17A

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A

Chain SX

40S ribosomal protein S23-A

Chain Sb

40S ribosomal protein S27-A