J3_8Y0U_039

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0U_039 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.2855

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8Y0U|1|C2|U|1293
8Y0U|1|C2|G|1294
*
8Y0U|1|C2|U|1303
8Y0U|1|C2|G|1304
8Y0U|1|C2|U|1305
8Y0U|1|C2|C|1306
*
8Y0U|1|C2|G|1318
8Y0U|1|C2|A|1319
8Y0U|1|C2|U|1320
8Y0U|1|C2|A|1321
8Y0U|1|C2|A|1322

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2A

Chain SC

40S ribosomal protein S2