3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
AAC*GGACUA*UGGAAGUUU
Length
18 nucleotides
Bulged bases
8Y0U|1|C2|U|1413, 8Y0U|1|C2|U|1414
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Y0U_040 not in the Motif Atlas
Homologous match to J3_8C3A_086
Geometric discrepancy: 0.145
The information below is about J3_8C3A_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_80847.1
Basepair signature
cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

8Y0U|1|C2|A|1336
8Y0U|1|C2|A|1337
8Y0U|1|C2|C|1338
*
8Y0U|1|C2|G|1386
8Y0U|1|C2|G|1387
8Y0U|1|C2|A|1388
8Y0U|1|C2|C|1389
8Y0U|1|C2|U|1390
8Y0U|1|C2|A|1391
*
8Y0U|1|C2|U|1407
8Y0U|1|C2|G|1408
8Y0U|1|C2|G|1409
8Y0U|1|C2|A|1410
8Y0U|1|C2|A|1411
8Y0U|1|C2|G|1412
8Y0U|1|C2|U|1413
8Y0U|1|C2|U|1414
8Y0U|1|C2|U|1415

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SQ
Small ribosomal subunit protein uS9A
Chain SU
Small ribosomal subunit protein uS10
Chain Sd
Small ribosomal subunit protein uS14A

Coloring options:


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