J3_8Y0W_004

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0W_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2295

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8Y0W|1|L5|G|1969
8Y0W|1|L5|A|1970
8Y0W|1|L5|C|1971
*
8Y0W|1|L5|G|1995
8Y0W|1|L5|C|1996
8Y0W|1|L5|U|1997
8Y0W|1|L5|A|1998
8Y0W|1|L5|A|1999
8Y0W|1|L5|G|2000
8Y0W|1|L5|G|2001
*
8Y0W|1|L5|C|2016
8Y0W|1|L5|A|2017
8Y0W|1|L5|C|2018

Current chains

Chain L5

28S rRNA

Nearby chains