J3_8Y0W_034
3D structure
- PDB id
- 8Y0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with eIF5A, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8Y0W|1|L5|C|4337, 8Y0W|1|L5|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y0W_034 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0703
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8Y0W|1|L5|G|4228
8Y0W|1|L5|U|4229
8Y0W|1|L5|C|4230
*
8Y0W|1|L5|G|4331
8Y0W|1|L5|C|4332
8Y0W|1|L5|C|4333
8Y0W|1|L5|U|4334
8Y0W|1|L5|C|4335
8Y0W|1|L5|A|4336
8Y0W|1|L5|C|4337
8Y0W|1|L5|G|4338
8Y0W|1|L5|A|4339
8Y0W|1|L5|U|4340
8Y0W|1|L5|C|4341
8Y0W|1|L5|C|4342
*
8Y0W|1|L5|G|4370
8Y0W|1|L5|G|4371
8Y0W|1|L5|U|4372
8Y0W|1|L5|G|4373
8Y0W|1|L5|U|4374
8Y0W|1|L5|C|4375
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain 5
- Eukaryotic translation initiation factor 5A-1
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
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