3D structure

PDB id
8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dormant ribosome with SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAC*GCUAAGG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Y0X_004 not in the Motif Atlas
Homologous match to J3_5TBW_007
Geometric discrepancy: 0.2112
The information below is about J3_5TBW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.3
Basepair signature
cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
7

Unit IDs

8Y0X|1|L5|G|1969
8Y0X|1|L5|A|1970
8Y0X|1|L5|C|1971
*
8Y0X|1|L5|G|1995
8Y0X|1|L5|C|1996
8Y0X|1|L5|U|1997
8Y0X|1|L5|A|1998
8Y0X|1|L5|A|1999
8Y0X|1|L5|G|2000
8Y0X|1|L5|G|2001
*
8Y0X|1|L5|C|2016
8Y0X|1|L5|A|2017
8Y0X|1|L5|C|2018

Current chains

Chain L5
28S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.546 s