J3_8Y0X_029
3D structure
- PDB id
- 8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dormant ribosome with SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 8Y0X|1|L5|C|2470, 8Y0X|1|L5|A|2472, 8Y0X|1|L5|G|2475, 8Y0X|1|L5|G|2503, 8Y0X|1|L5|C|2504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y0X_029 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5867
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8Y0X|1|L5|A|2451
8Y0X|1|L5|G|2452
8Y0X|1|L5|A|2453
8Y0X|1|L5|U|2454
8Y0X|1|L5|G|2455
8Y0X|1|L5|G|2456
*
8Y0X|1|L5|C|2465
8Y0X|1|L5|G|2466
8Y0X|1|L5|U|2467
8Y0X|1|L5|U|2468
8Y0X|1|L5|C|2469
8Y0X|1|L5|C|2470
8Y0X|1|L5|G|2471
8Y0X|1|L5|A|2472
8Y0X|1|L5|A|2473
8Y0X|1|L5|G|2474
8Y0X|1|L5|G|2475
8Y0X|1|L5|G|2476
*
8Y0X|1|L5|C|2501
8Y0X|1|L5|G|2502
8Y0X|1|L5|G|2503
8Y0X|1|L5|C|2504
8Y0X|1|L5|C|2505
8Y0X|1|L5|G|2506
8Y0X|1|L5|A|2507
8Y0X|1|L5|U|2508
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
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