J3_8Y36_007

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8Y36|1|A|A|2545, 8Y36|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y36_007 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.075

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8Y36|1|A|C|2544
8Y36|1|A|A|2545
8Y36|1|A|U|2546
8Y36|1|A|C|2547
*
8Y36|1|A|G|2572
8Y36|1|A|U|2573
8Y36|1|A|U|2574
*
8Y36|1|A|A|2588
8Y36|1|A|U|2589
8Y36|1|A|U|2590
8Y36|1|A|A|2591
8Y36|1|A|A|2592
8Y36|1|A|A|2593
8Y36|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Large ribosomal subunit protein uL14