J3_8Y37_007

3D structure

PDB id

8Y37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8Y37|1|A|A|2545, 8Y37|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y37_007 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0911

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8Y37|1|A|C|2544
8Y37|1|A|A|2545
8Y37|1|A|U|2546
8Y37|1|A|C|2547
*
8Y37|1|A|G|2572
8Y37|1|A|U|2573
8Y37|1|A|U|2574
*
8Y37|1|A|A|2588
8Y37|1|A|U|2589
8Y37|1|A|U|2590
8Y37|1|A|A|2591
8Y37|1|A|A|2592
8Y37|1|A|A|2593
8Y37|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Large ribosomal subunit protein uL14