J3_8Y38_008
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8Y38|1|A|A|2545, 8Y38|1|A|U|2546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y38_008 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.0911
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8Y38|1|A|C|2544
8Y38|1|A|A|2545
8Y38|1|A|U|2546
8Y38|1|A|C|2547
*
8Y38|1|A|G|2572
8Y38|1|A|U|2573
8Y38|1|A|U|2574
*
8Y38|1|A|A|2588
8Y38|1|A|U|2589
8Y38|1|A|U|2590
8Y38|1|A|A|2591
8Y38|1|A|A|2592
8Y38|1|A|A|2593
8Y38|1|A|G|2594
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL14
Coloring options: