J3_8Y38_013
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8Y38|1|a|A|984, 8Y38|1|a|G|985
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y38_013 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1204
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8Y38|1|a|U|964
8Y38|1|a|U|965
8Y38|1|a|U|966
8Y38|1|a|A|967
8Y38|1|a|A|968
8Y38|1|a|U|969
8Y38|1|a|U|970
8Y38|1|a|C|971
*
8Y38|1|a|G|982
8Y38|1|a|A|983
8Y38|1|a|A|984
8Y38|1|a|G|985
8Y38|1|a|A|986
8Y38|1|a|A|987
8Y38|1|a|C|988
8Y38|1|a|C|989
8Y38|1|a|U|990
8Y38|1|a|U|991
8Y38|1|a|A|992
8Y38|1|a|C|993
*
8Y38|1|a|G|1231
8Y38|1|a|G|1232
8Y38|1|a|C|1233
8Y38|1|a|U|1234
8Y38|1|a|A|1235
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14B
- Chain s
- Small ribosomal subunit protein uS19
Coloring options: