J3_8Y38_020
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8Y38|1|A|U|34, 8Y38|1|A|U|494, 8Y38|1|A|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y38_020 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.0954
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8Y38|1|A|C|32
8Y38|1|A|U|33
8Y38|1|A|U|34
8Y38|1|A|G|35
*
8Y38|1|A|C|491
8Y38|1|A|G|492
8Y38|1|A|A|493
8Y38|1|A|U|494
8Y38|1|A|A|495
8Y38|1|A|G|496
8Y38|1|A|U|497
8Y38|1|A|G|498
8Y38|1|A|A|499
8Y38|1|A|A|500
8Y38|1|A|C|501
8Y38|1|A|C|502
8Y38|1|A|A|503
8Y38|1|A|G|504
8Y38|1|A|U|505
8Y38|1|A|A|506
8Y38|1|A|C|507
*
8Y38|1|A|G|514
8Y38|1|A|G|515
8Y38|1|A|A|516
8Y38|1|A|A|517
8Y38|1|A|A|518
8Y38|1|A|G|519
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain E
- Large ribosomal subunit protein uL4
- Chain O
- Large ribosomal subunit protein bL20
- Chain R
- Large ribosomal subunit protein uL23
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