J3_8Y38_025

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y38_025 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0939

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8Y38|1|A|G|1468
8Y38|1|A|G|1469
8Y38|1|A|G|1470
8Y38|1|A|A|1471
8Y38|1|A|C|1472
8Y38|1|A|G|1473
*
8Y38|1|A|C|1611
8Y38|1|A|C|1612
*
8Y38|1|A|G|1615
8Y38|1|A|A|1616
8Y38|1|A|A|1617
8Y38|1|A|A|1618
8Y38|1|A|A|1619
8Y38|1|A|G|1620
8Y38|1|A|C|1621

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2