J3_8Y39_004

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

8Y39|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_004 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1198

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8Y39|1|A|C|1342
8Y39|1|A|U|1343
8Y39|1|A|A|1344
8Y39|1|A|A|1345
8Y39|1|A|G|1346
*
8Y39|1|A|C|1649
8Y39|1|A|G|1650
8Y39|1|A|C|1651
8Y39|1|A|A|1652
8Y39|1|A|A|1653
8Y39|1|A|A|1654
8Y39|1|A|C|1655
*
8Y39|1|A|G|1664
8Y39|1|A|U|1665
8Y39|1|A|A|1666
8Y39|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34