J3_8Y39_008

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8Y39|1|A|A|2545, 8Y39|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_008 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0911

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8Y39|1|A|C|2544
8Y39|1|A|A|2545
8Y39|1|A|U|2546
8Y39|1|A|C|2547
*
8Y39|1|A|G|2572
8Y39|1|A|U|2573
8Y39|1|A|U|2574
*
8Y39|1|A|A|2588
8Y39|1|A|U|2589
8Y39|1|A|U|2590
8Y39|1|A|A|2591
8Y39|1|A|A|2592
8Y39|1|A|A|2593
8Y39|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Large ribosomal subunit protein uL14