J3_8Y39_017
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 8Y39|1|a|U|1250, 8Y39|1|a|U|1312
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_017 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.151
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8Y39|1|a|C|1247
8Y39|1|a|A|1248
8Y39|1|a|A|1249
8Y39|1|a|U|1250
8Y39|1|a|G|1251
*
8Y39|1|a|C|1306
8Y39|1|a|U|1307
8Y39|1|a|C|1308
8Y39|1|a|A|1309
8Y39|1|a|G|1310
8Y39|1|a|U|1311
8Y39|1|a|U|1312
8Y39|1|a|C|1313
*
8Y39|1|a|G|1344
8Y39|1|a|C|1345
8Y39|1|a|U|1346
8Y39|1|a|G|1347
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain m
- Small ribosomal subunit protein uS13
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