J3_8Y39_018

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_018 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0888

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8Y39|1|A|G|30
8Y39|1|A|C|31
*
8Y39|1|A|G|520
8Y39|1|A|U|521
8Y39|1|A|G|522
8Y39|1|A|A|523
8Y39|1|A|A|524
8Y39|1|A|A|525
8Y39|1|A|A|526
8Y39|1|A|G|527
*
8Y39|1|A|C|554
8Y39|1|A|C|555

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein uL24