J3_8Y39_022

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8Y39|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_022 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.2134

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8Y39|1|A|C|272
8Y39|1|A|A|273
8Y39|1|A|A|274
8Y39|1|A|A|275
8Y39|1|A|C|276
*
8Y39|1|A|G|295
8Y39|1|A|G|296
8Y39|1|A|G|297
8Y39|1|A|U|298
8Y39|1|A|U|299
8Y39|1|A|G|300
8Y39|1|A|U|301
8Y39|1|A|A|302
*
8Y39|1|A|U|415
8Y39|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains