J3_8Y39_023

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAU*AAUCAAAGAA*UGUAG

Length

20 nucleotides

Bulged bases

8Y39|1|A|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_023 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0715

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8Y39|1|A|C|340
8Y39|1|A|G|341
8Y39|1|A|A|342
8Y39|1|A|A|343
8Y39|1|A|U|344
*
8Y39|1|A|A|359
8Y39|1|A|A|360
8Y39|1|A|U|361
8Y39|1|A|C|362
8Y39|1|A|A|363
8Y39|1|A|A|364
8Y39|1|A|A|365
8Y39|1|A|G|366
8Y39|1|A|A|367
8Y39|1|A|A|368
*
8Y39|1|A|U|380
8Y39|1|A|G|381
8Y39|1|A|U|382
8Y39|1|A|A|383
8Y39|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain S

Large ribosomal subunit protein uL24