J3_8Y39_031
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 8Y39|1|a|U|731
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_031 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1418
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|a|U|680
8Y39|1|a|G|681
*
8Y39|1|a|C|725
8Y39|1|a|A|726
8Y39|1|a|C|727
8Y39|1|a|C|728
8Y39|1|a|A|729
8Y39|1|a|G|730
8Y39|1|a|U|731
8Y39|1|a|G|732
8Y39|1|a|G|733
*
8Y39|1|a|C|740
8Y39|1|a|G|741
8Y39|1|a|A|742
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain f
- Small ribosomal subunit protein bS6
- Chain k
- Small ribosomal subunit protein uS11
- Chain o
- Small ribosomal subunit protein uS15
- Chain r
- Small ribosomal subunit protein bS18
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