J3_8Y39_036

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_036 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1417

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8Y39|1|a|U|1084
8Y39|1|a|G|1085
*
8Y39|1|a|U|1094
8Y39|1|a|G|1095
8Y39|1|a|U|1096
8Y39|1|a|U|1097
*
8Y39|1|a|G|1110
8Y39|1|a|C|1111
8Y39|1|a|A|1112
8Y39|1|a|A|1113

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain e

Small ribosomal subunit protein uS5