J3_8Y5K_031

3D structure

PDB id

8Y5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5K|1|3|U|1073
8Y5K|1|3|G|1074
*
8Y5K|1|3|U|1083
8Y5K|1|3|G|1084
8Y5K|1|3|U|1085
8Y5K|1|3|U|1086
8Y5K|1|3|G|1087
*
8Y5K|1|3|C|1098
8Y5K|1|3|G|1099
8Y5K|1|3|C|1100
8Y5K|1|3|A|1101
8Y5K|1|3|A|1102

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain J

30S ribosomal protein S5

Chain Z

30S ribosomal protein S21