J3_8Y5M_003
3D structure
- PDB id
- 8Y5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8Y5M|1|1|U|34, 8Y5M|1|1|U|448, 8Y5M|1|1|C|456
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y5M_003 not in the Motif Atlas
- Geometric match to J3_5J7L_067
- Geometric discrepancy: 0.0807
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8Y5M|1|1|C|32
8Y5M|1|1|C|33
8Y5M|1|1|U|34
8Y5M|1|1|G|35
*
8Y5M|1|1|C|445
8Y5M|1|1|G|446
8Y5M|1|1|A|447
8Y5M|1|1|U|448
8Y5M|1|1|A|449
8Y5M|1|1|G|450
8Y5M|1|1|U|451
8Y5M|1|1|G|452
8Y5M|1|1|A|453
8Y5M|1|1|A|454
8Y5M|1|1|C|455
8Y5M|1|1|C|456
8Y5M|1|1|A|457
8Y5M|1|1|G|458
8Y5M|1|1|U|459
8Y5M|1|1|A|460
8Y5M|1|1|C|461
*
8Y5M|1|1|G|468
8Y5M|1|1|G|469
8Y5M|1|1|A|470
8Y5M|1|1|A|471
8Y5M|1|1|A|472
8Y5M|1|1|G|473
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain d
- 50S ribosomal protein L4
- Chain q
- 50S ribosomal protein L20
- Chain t
- 50S ribosomal protein L23
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