J3_8Y5N_008
3D structure
- PDB id
- 8Y5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-A state 3 containing mRNA with 21-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGAUG*CAUUUAAAGAAA*UCAC
- Length
- 21 nucleotides
- Bulged bases
- 8Y5N|1|1|U|1083, 8Y5N|1|1|A|1084
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y5N|1|1|G|1055
8Y5N|1|1|G|1056
8Y5N|1|1|A|1057
8Y5N|1|1|U|1058
8Y5N|1|1|G|1059
*
8Y5N|1|1|C|1079
8Y5N|1|1|A|1080
8Y5N|1|1|U|1081
8Y5N|1|1|U|1082
8Y5N|1|1|U|1083
8Y5N|1|1|A|1084
8Y5N|1|1|A|1085
8Y5N|1|1|A|1086
8Y5N|1|1|G|1087
8Y5N|1|1|A|1088
8Y5N|1|1|A|1089
8Y5N|1|1|A|1090
*
8Y5N|1|1|U|1101
8Y5N|1|1|C|1102
8Y5N|1|1|A|1103
8Y5N|1|1|C|1104
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain i
- 50S ribosomal protein L11
Coloring options: