J3_8Y5O_016
3D structure
- PDB id
- 8Y5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8Y5O|1|1|A|2518, 8Y5O|1|1|U|2519, 8Y5O|1|1|A|2564, 8Y5O|1|1|A|2565
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y5O_016 not in the Motif Atlas
- Geometric match to J3_5J7L_046
- Geometric discrepancy: 0.2464
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8Y5O|1|1|C|2517
8Y5O|1|1|A|2518
8Y5O|1|1|U|2519
8Y5O|1|1|C|2520
*
8Y5O|1|1|G|2545
8Y5O|1|1|U|2546
8Y5O|1|1|A|2547
*
8Y5O|1|1|U|2561
8Y5O|1|1|U|2562
8Y5O|1|1|U|2563
8Y5O|1|1|A|2564
8Y5O|1|1|A|2565
8Y5O|1|1|A|2566
8Y5O|1|1|G|2567
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
Coloring options: