J3_8Y5O_022
3D structure
- PDB id
- 8Y5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGGUU*AGCUUGA*UGACG
- Length
- 17 nucleotides
- Bulged bases
- 8Y5O|1|3|U|653
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y5O|1|3|C|586
8Y5O|1|3|G|587
8Y5O|1|3|G|588
8Y5O|1|3|U|589
8Y5O|1|3|U|590
*
8Y5O|1|3|A|649
8Y5O|1|3|G|650
8Y5O|1|3|C|651
8Y5O|1|3|U|652
8Y5O|1|3|U|653
8Y5O|1|3|G|654
8Y5O|1|3|A|655
*
8Y5O|1|3|U|751
8Y5O|1|3|G|752
8Y5O|1|3|A|753
8Y5O|1|3|C|754
8Y5O|1|3|G|755
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S8
- Chain Q
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
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