J3_8Y5P_006

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8Y5P|1|1|U|686, 8Y5P|1|1|A|792, 8Y5P|1|1|A|793

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5P_006 not in the Motif Atlas

Geometric match to J3_5J7L_038

Geometric discrepancy: 0.2089

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8Y5P|1|1|U|683
8Y5P|1|1|G|684
8Y5P|1|1|A|685
8Y5P|1|1|U|686
8Y5P|1|1|C|687
8Y5P|1|1|U|688
8Y5P|1|1|A|689
*
8Y5P|1|1|U|773
8Y5P|1|1|G|774
8Y5P|1|1|G|775
*
8Y5P|1|1|C|791
8Y5P|1|1|A|792
8Y5P|1|1|A|793
8Y5P|1|1|A|794

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2