J3_8Y5P_011

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5P_011 not in the Motif Atlas

Geometric match to J3_5J7L_043

Geometric discrepancy: 0.1906

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8Y5P|1|1|U|1344
8Y5P|1|1|C|1345
8Y5P|1|1|G|1346
8Y5P|1|1|A|1347
8Y5P|1|1|C|1348
8Y5P|1|1|C|1349
*
8Y5P|1|1|G|1382
8Y5P|1|1|A|1383
8Y5P|1|1|A|1384
8Y5P|1|1|A|1385
*
8Y5P|1|1|U|1402
8Y5P|1|1|A|1403

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23