J3_8Y5P_031

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UAUC*GAGAC*GGUG

Length

13 nucleotides

Bulged bases

8Y5P|1|3|U|1183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5P|1|3|U|1116
8Y5P|1|3|A|1117
8Y5P|1|3|U|1118
8Y5P|1|3|C|1119
*
8Y5P|1|3|G|1154
8Y5P|1|3|A|1155
8Y5P|1|3|G|1156
8Y5P|1|3|A|1157
8Y5P|1|3|C|1158
*
8Y5P|1|3|G|1181
8Y5P|1|3|G|1182
8Y5P|1|3|U|1183
8Y5P|1|3|G|1184

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S9

Chain O

30S ribosomal protein S10

Chain S

30S ribosomal protein S14