J3_8Y5Q_032
3D structure
- PDB id
- 8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUC*GAGACUGC*GAGGAAGGUG
- Length
- 22 nucleotides
- Bulged bases
- 8Y5Q|1|3|U|1183
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y5Q|1|3|U|1116
8Y5Q|1|3|A|1117
8Y5Q|1|3|U|1118
8Y5Q|1|3|C|1119
*
8Y5Q|1|3|G|1154
8Y5Q|1|3|A|1155
8Y5Q|1|3|G|1156
8Y5Q|1|3|A|1157
8Y5Q|1|3|C|1158
8Y5Q|1|3|U|1159
8Y5Q|1|3|G|1160
8Y5Q|1|3|C|1161
*
8Y5Q|1|3|G|1175
8Y5Q|1|3|A|1176
8Y5Q|1|3|G|1177
8Y5Q|1|3|G|1178
8Y5Q|1|3|A|1179
8Y5Q|1|3|A|1180
8Y5Q|1|3|G|1181
8Y5Q|1|3|G|1182
8Y5Q|1|3|U|1183
8Y5Q|1|3|G|1184
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
Coloring options: