J3_8Y5R_005

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8Y5R|1|1|U|321, 8Y5R|1|1|C|323

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5R_005 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.0883

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8Y5R|1|1|G|297
8Y5R|1|1|G|298
8Y5R|1|1|A|299
8Y5R|1|1|A|300
8Y5R|1|1|G|301
*
8Y5R|1|1|C|316
8Y5R|1|1|G|317
8Y5R|1|1|C|318
8Y5R|1|1|G|319
8Y5R|1|1|A|320
8Y5R|1|1|U|321
8Y5R|1|1|A|322
8Y5R|1|1|C|323
8Y5R|1|1|A|324
8Y5R|1|1|G|325
*
8Y5R|1|1|C|337
8Y5R|1|1|G|338
8Y5R|1|1|U|339
8Y5R|1|1|A|340
8Y5R|1|1|C|341

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24