J3_8Y5R_019
3D structure
- PDB id
- 8Y5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8Y5R|1|2|U|14, 8Y5R|1|2|A|108
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y5R_019 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.1098
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Y5R|1|2|G|10
8Y5R|1|2|C|11
8Y5R|1|2|C|12
8Y5R|1|2|G|13
8Y5R|1|2|U|14
8Y5R|1|2|A|15
8Y5R|1|2|G|16
*
8Y5R|1|2|C|68
8Y5R|1|2|G|69
8Y5R|1|2|C|70
*
8Y5R|1|2|G|106
8Y5R|1|2|G|107
8Y5R|1|2|A|108
8Y5R|1|2|A|109
8Y5R|1|2|C|110
Current chains
- Chain 2
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- 50S ribosomal protein L18
- Chain v
- 50S ribosomal protein L25
- Chain w
- 50S ribosomal protein L27
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