J3_8Y5S_007

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5S_007 not in the Motif Atlas

Geometric match to J3_4WF9_003

Geometric discrepancy: 0.16

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8Y5S|1|1|C|698
8Y5S|1|1|A|699
8Y5S|1|1|G|700
*
8Y5S|1|1|C|732
8Y5S|1|1|G|733
8Y5S|1|1|A|734
8Y5S|1|1|A|735
8Y5S|1|1|C|736
*
8Y5S|1|1|G|760
8Y5S|1|1|A|761
8Y5S|1|1|U|762
8Y5S|1|1|G|763

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2