J3_8Y5S_008

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

8Y5S|1|1|A|1084

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5S|1|1|G|1055
8Y5S|1|1|G|1056
8Y5S|1|1|A|1057
*
8Y5S|1|1|U|1081
8Y5S|1|1|U|1082
8Y5S|1|1|U|1083
8Y5S|1|1|A|1084
8Y5S|1|1|A|1085
8Y5S|1|1|A|1086
8Y5S|1|1|G|1087
*
8Y5S|1|1|C|1102
8Y5S|1|1|A|1103
8Y5S|1|1|C|1104

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain i

50S ribosomal protein L11