J3_8Y5S_017

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUG*CC*GAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y5S_017 not in the Motif Atlas

Geometric match to J3_5J7L_047

Geometric discrepancy: 0.1961

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8Y5S|1|1|C|2789
8Y5S|1|1|U|2790
8Y5S|1|1|G|2791
*
8Y5S|1|1|C|2805
8Y5S|1|1|C|2806
*
8Y5S|1|1|G|2892
8Y5S|1|1|A|2893
8Y5S|1|1|G|2894

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3