J3_8YDE_002
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8YDE|1|1|A|504, 8YDE|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDE_002 not in the Motif Atlas
- Geometric match to J3_8B0X_032
- Geometric discrepancy: 0.0658
- The information below is about J3_8B0X_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8YDE|1|1|G|30
8YDE|1|1|C|31
*
8YDE|1|1|G|474
8YDE|1|1|C|475
8YDE|1|1|G|476
8YDE|1|1|A|477
8YDE|1|1|A|478
8YDE|1|1|A|479
8YDE|1|1|A|480
8YDE|1|1|G|481
8YDE|1|1|A|482
8YDE|1|1|A|483
8YDE|1|1|C|484
*
8YDE|1|1|G|496
8YDE|1|1|A|497
8YDE|1|1|G|498
8YDE|1|1|U|499
8YDE|1|1|G|500
8YDE|1|1|A|501
8YDE|1|1|A|502
8YDE|1|1|A|503
8YDE|1|1|A|504
8YDE|1|1|A|505
8YDE|1|1|G|506
8YDE|1|1|A|507
8YDE|1|1|A|508
8YDE|1|1|C|509
8YDE|1|1|C|510
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain q
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L22
- Chain u
- 50S ribosomal protein L24
Coloring options: