J3_8YDF_003
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8YDF|1|1|U|34, 8YDF|1|1|U|448, 8YDF|1|1|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDF_003 not in the Motif Atlas
- Geometric match to J3_8B0X_033
- Geometric discrepancy: 0.085
- The information below is about J3_8B0X_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8YDF|1|1|C|32
8YDF|1|1|C|33
8YDF|1|1|U|34
8YDF|1|1|G|35
*
8YDF|1|1|C|445
8YDF|1|1|G|446
8YDF|1|1|A|447
8YDF|1|1|U|448
8YDF|1|1|A|449
8YDF|1|1|G|450
8YDF|1|1|U|451
8YDF|1|1|G|452
8YDF|1|1|A|453
8YDF|1|1|A|454
8YDF|1|1|C|455
8YDF|1|1|C|456
8YDF|1|1|A|457
8YDF|1|1|G|458
8YDF|1|1|U|459
8YDF|1|1|A|460
8YDF|1|1|C|461
*
8YDF|1|1|G|468
8YDF|1|1|G|469
8YDF|1|1|A|470
8YDF|1|1|A|471
8YDF|1|1|A|472
8YDF|1|1|G|473
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain d
- 50S ribosomal protein L4
- Chain q
- 50S ribosomal protein L20
- Chain t
- 50S ribosomal protein L23
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