J3_8YDF_005
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 8YDF|1|1|U|321, 8YDF|1|1|C|323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDF_005 not in the Motif Atlas
- Geometric match to J3_8B0X_034
- Geometric discrepancy: 0.0879
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8YDF|1|1|G|297
8YDF|1|1|G|298
8YDF|1|1|A|299
8YDF|1|1|A|300
8YDF|1|1|G|301
*
8YDF|1|1|C|316
8YDF|1|1|G|317
8YDF|1|1|C|318
8YDF|1|1|G|319
8YDF|1|1|A|320
8YDF|1|1|U|321
8YDF|1|1|A|322
8YDF|1|1|C|323
8YDF|1|1|A|324
8YDF|1|1|G|325
*
8YDF|1|1|C|337
8YDF|1|1|G|338
8YDF|1|1|U|339
8YDF|1|1|A|340
8YDF|1|1|C|341
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L24
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