J3_8YDF_010

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8YDF|1|1|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YDF_010 not in the Motif Atlas

Geometric match to J3_8B0X_019

Geometric discrepancy: 0.157

The information below is about J3_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8YDF|1|1|C|1306
8YDF|1|1|A|1307
8YDF|1|1|A|1308
8YDF|1|1|G|1309
*
8YDF|1|1|C|1605
8YDF|1|1|C|1606
8YDF|1|1|C|1607
8YDF|1|1|A|1608
8YDF|1|1|A|1609
8YDF|1|1|A|1610
8YDF|1|1|C|1611
*
8YDF|1|1|G|1620
8YDF|1|1|U|1621
8YDF|1|1|G|1622

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34