J3_8YDF_026
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDF_026 not in the Motif Atlas
- Geometric match to J3_8B0X_005
- Geometric discrepancy: 0.0819
- The information below is about J3_8B0X_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8YDF|1|3|C|936
8YDF|1|3|A|937
8YDF|1|3|A|938
8YDF|1|3|G|939
*
8YDF|1|3|C|1344
8YDF|1|3|U|1345
8YDF|1|3|A|1346
8YDF|1|3|G|1347
8YDF|1|3|U|1348
8YDF|1|3|A|1349
8YDF|1|3|A|1350
*
8YDF|1|3|U|1372
8YDF|1|3|G|1373
8YDF|1|3|A|1374
8YDF|1|3|A|1375
8YDF|1|3|U|1376
8YDF|1|3|A|1377
8YDF|1|3|C|1378
8YDF|1|3|G|1379
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S7
- Chain N
- 30S ribosomal protein S9
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