J3_8YDG_008
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GGAUG*CAUUUAAAGAAA*UCAC
- Length
- 21 nucleotides
- Bulged bases
- 8YDG|1|1|U|1083, 8YDG|1|1|A|1084
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDG|1|1|G|1055
8YDG|1|1|G|1056
8YDG|1|1|A|1057
8YDG|1|1|U|1058
8YDG|1|1|G|1059
*
8YDG|1|1|C|1079
8YDG|1|1|A|1080
8YDG|1|1|U|1081
8YDG|1|1|U|1082
8YDG|1|1|U|1083
8YDG|1|1|A|1084
8YDG|1|1|A|1085
8YDG|1|1|A|1086
8YDG|1|1|G|1087
8YDG|1|1|A|1088
8YDG|1|1|A|1089
8YDG|1|1|A|1090
*
8YDG|1|1|U|1101
8YDG|1|1|C|1102
8YDG|1|1|A|1103
8YDG|1|1|C|1104
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain i
- 50S ribosomal protein L11
Coloring options: