J3_8YDG_021
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAUUG*CAGC
- Length
- 22 nucleotides
- Bulged bases
- 8YDG|1|3|C|48, 8YDG|1|3|A|51, 8YDG|1|3|U|368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDG|1|3|G|46
8YDG|1|3|C|47
8YDG|1|3|C|48
8YDG|1|3|U|49
8YDG|1|3|A|50
8YDG|1|3|A|51
8YDG|1|3|C|52
*
8YDG|1|3|G|359
8YDG|1|3|G|360
8YDG|1|3|G|361
8YDG|1|3|G|362
8YDG|1|3|A|363
8YDG|1|3|A|364
8YDG|1|3|U|365
8YDG|1|3|A|366
8YDG|1|3|U|367
8YDG|1|3|U|368
8YDG|1|3|G|369
*
8YDG|1|3|C|392
8YDG|1|3|A|393
8YDG|1|3|G|394
8YDG|1|3|C|395
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 0
- Elongation factor G
- Chain Q
- 30S ribosomal protein S12
- Chain U
- 30S ribosomal protein S16
Coloring options: